TriMetAss 1.1

TriMetAss has been updated to version 1.1. The new version addresses a number of minor issues and brings two new handy features. The update can be found here.

New features:

• Multiple input files can now be specified by adding several -1 and -2 options.
• TriMetAss now automatically stops if the candidate reads are the same for two iterations in a row.

Fixed issues:

• Support for recent versions of Trinity that no longer contain the Trinity.pl script.
• A minor bug causing TriMetAss to use more memory than necessary has been fixed.
• Fixed the --stop_total option so that TriMetAss actually uses this option (rather than --stop_length)
• Allowed complicated paths to be supplied for the output directory.

I would like to thank users Rickard Hammarén, Dr. Tatsuya Unno, Dr. Gisle Vestergaard and Dr. Joseph Nesme for providing me with the underlying information to provide these fixes. Thanks a lot!