Consension

Consension – Consensus generation of OTU sequences from long-read sequencing amplicons
Johan Bengtsson-Palme, R. Henrik Nilsson, Christian Wurzbacher (2018)

Consension is a tool for generating high-quality consensus sequences for OTUs from amplicons sequences using long-read sequencing platforms, such as the NanoPore or PacBio sequencers. The software takes a DNA sequence alignment and a Mothur OTU table and generates consensus sequences for each OTU in the table. The software is written in Perl and has no other external dependencies (but requires a Mothur table as input).

Download Consension (version 1.0)

Please report bugs to my: first name (dot) last name (at) microbiology (dot) se

Version history

  • 2nd February 2018 – 1.0 – first public release.

Contact information

Johan Bengtsson-Palme (firstname.lastname [at] microbiology.se)
University of Gothenburg
Department of Infectious Diseases, Institute of Biomedicine

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